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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79513357_79514785_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
79513357 - 79514785
Intron Length:
1429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTCGT
5'SS Class:
major
3'SS Sequence:
ACCTTCTCAAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTCTCCCAACCT
Flanking Amino Acid:
HVLPEDPLFAMDPFAIHRQH
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
70.8
41
Major BPS
85
0.87
0.8
85.6
23
Major PPT
59.5
0.21
1.1
60.6
33.7
Minor 5ss
32.9
-1.9
3.1
45.8
42.4
Minor BPS
48.9
-0
2.3
76.28
46.2

Associated Gene:

Gene:
MLF2
Ensembl Gene ID:
ENSAPLG00000002492
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035918
79509079 - 79565115
56037