About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79514392_79514785_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79514392 - 79514785
Intron Length:
394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTCGT
5'SS Class:
major
3'SS Sequence:
TGTCTGTCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TTCCCTCTCACT
Flanking Amino Acid:
MGSRRTPSSPYWLLLIKLAS
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
70.8
41
Major BPS
72.7
0.56
1
75
30.1
Major PPT
75
0.56
0.9
69.1
36.9
Minor 5ss
32.9
-1.9
3.1
45.8
42.4
Minor BPS
49.3
0.03
2.1
73.75
43.2

Associated Gene:

Gene:
MLF2
Ensembl Gene ID:
ENSAPLG00000002492
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002535
79509079 - 79514816
5738