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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79519583_79519863_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79519583 - 79519863
Intron Length:
281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGCGAGCT
5'SS Class:
major
3'SS Sequence:
TTGCTTAATTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
ATTTGCTTAATT
Flanking Amino Acid:
LLVWDSSSLSGMRKMELKRM
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.1
59.7
39.5
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
65
0.34
1.1
69.4
39.9
Minor 5ss
26.1
-2.7
3.4
30.7
42.7
Minor BPS
75.6
0.88
1.7
90.25
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000776
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048393
79519015 - 79520952
1938