About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79519946_79520106_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79519946 - 79520106
Intron Length:
161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACGTATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTGCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAC
U12 Branch Point Sequence:
CTTCAGTTAACC
Flanking Amino Acid:
MKRKVAMRMTKETRMGKSRM
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
78.6
37.5
Major BPS
65.7
0.39
1.1
67.4
36.7
Major PPT
73
0.52
0.9
72.8
37.5
Minor 5ss
38.7
-1.3
3
51.4
45.2
Minor BPS
51.2
0.02
2.2
68.91
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000776
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048393
79519015 - 79520952
1938
ENSAPLT00000000824
79519864 - 79521657
1794