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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79534962_79535068_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79534962 - 79535068
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAACT
5'SS Class:
strong_major
3'SS Sequence:
GTCCCTCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTCGAC
U12 Branch Point Sequence:
TGGCCTTCGACC
Flanking Amino Acid:
TSVLWKRHGGSAHQEPHVVL
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.5
31.7
Major BPS
51.5
0.04
1.3
53.5
42
Major PPT
79.1
0.65
0.8
72.7
32.1
Minor 5ss
35.5
-1.7
3.1
50.2
45.8
Minor BPS
50.6
0
1.6
60.22
39.2

Associated Gene:

Gene:
LAG3
Ensembl Gene ID:
ENSAPLG00000002679
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002700
79533569 - 79540362
6794