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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79535776_79535954_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79535776 - 79535954
Intron Length:
179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCTTTCTCACTC
Flanking Amino Acid:
VSATHDLQILGFDGPANPVV
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
77.7
33.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
78.8
0.65
0.8
77.5
30.1
Minor 5ss
44.1
-0.6
2.8
56.9
47.3
Minor BPS
52.5
0.06
1.8
65.51
41

Associated Gene:

Gene:
LAG3
Ensembl Gene ID:
ENSAPLG00000002679
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002700
79533569 - 79540362
6794