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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79536249_79536602_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79536249 - 79536602
Intron Length:
354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
CTTTCCTGACGG
Flanking Amino Acid:
RRDVTLAVVTVTPSIPGPIS
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.9
33.7
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
88.1
0.86
0.6
84
24.1
Minor 5ss
27.4
-2.6
2.7
31.6
42.2
Minor BPS
48.4
-0.2
2.1
59.75
47.8

Associated Gene:

Gene:
LAG3
Ensembl Gene ID:
ENSAPLG00000002679
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002700
79533569 - 79540362
6794