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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79537280_79539678_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79537280 - 79539678
Intron Length:
2399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTAAT
U12 Branch Point Sequence:
CAACACCTAATA
Flanking Amino Acid:
CILALALQKRARIPASYPAL
Intron Amino Acid Position:
469

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.7
33.5
Major BPS
73.1
0.57
1
71.9
31.3
Major PPT
88.5
0.87
0.7
80.8
31.2
Minor 5ss
40
-1.1
2.7
42.4
44.3
Minor BPS
46
-0.3
1.8
53.09
38.4

Associated Gene:

Gene:
LAG3
Ensembl Gene ID:
ENSAPLG00000002679
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002700
79533569 - 79540362
6794