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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79567420_79567591_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79567420 - 79567591
Intron Length:
172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
CTCCATTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
CTTCCATCAATC
Flanking Amino Acid:
LPQDKVHYLQVPISRRMSHD
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.2
38.5
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
76.2
0.59
0.8
68
37.2
Minor 5ss
38.8
-1.3
3
50.2
46.4
Minor BPS
51.5
0.03
1.8
65.51
40

Associated Gene:

Gene:
GPR162
Ensembl Gene ID:
ENSAPLG00000028368
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045489
79564113 - 79568136
4024