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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79571270_79571553_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79571270 - 79571553
Intron Length:
284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGTTACA
5'SS Class:
major
3'SS Sequence:
TTTGCTTCCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTGAC
U12 Branch Point Sequence:
GGTTGTTTGACA
Flanking Amino Acid:
GEDTTVTARENIHHYVQRSL
Intron Amino Acid Position:
457

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
73.5
37.2
Major BPS
68.7
0.47
1.2
63.1
44.5
Major PPT
77.5
0.62
0.8
73
32
Minor 5ss
34.7
-1.7
2.9
43.6
43.5
Minor BPS
57.5
0.23
1.8
67.65
38.8

Associated Gene:

Gene:
P3H3
Ensembl Gene ID:
ENSAPLG00000002993
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003050
79568234 - 79578476
10243