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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79573790_79574437_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79573790 - 79574437
Intron Length:
648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCACTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTATTTTTCACT
Flanking Amino Acid:
EGLTVLKATQLAQNGDVDWR
Intron Amino Acid Position:
598

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.3
1.04
0.8
79.7
35.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
83.4
0.75
0.7
78.6
28.9
Minor 5ss
33
-1.9
3.2
43.9
43.9
Minor BPS
66.1
0.59
1.7
83.9
37.2

Associated Gene:

Gene:
P3H3
Ensembl Gene ID:
ENSAPLG00000002993
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003050
79568234 - 79578476
10243