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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79585762_79585861_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79585762 - 79585861
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGAGAT
5'SS Class:
major
3'SS Sequence:
TCCTCTCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
TCCTCTCTCACA
Flanking Amino Acid:
IYAMHWSTDSKLLVSASQDG
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
0.9
74
29.5
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
80.6
0.69
0.7
75.3
26.9
Minor 5ss
28.4
-2.5
3.4
38.4
40.9
Minor BPS
48.8
-0.1
2.1
63.12
43.7

Associated Gene:

Gene:
GNB3
Ensembl Gene ID:
ENSAPLG00000003313
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003388
79584802 - 79589215
4414