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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79585926_79586040_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79585926 - 79586040
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCAGAC
U12 Branch Point Sequence:
GAGACCAGACAC
Flanking Amino Acid:
IVWDTYTTNKVHAIPLRSSW
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
73.9
36.8
Major BPS
47.2
-0.1
1
40.3
30
Major PPT
78
0.63
0.8
69.3
36.9
Minor 5ss
29.6
-2.3
3.5
41.1
45.6
Minor BPS
37.5
-0.9
1.8
40.88
37.6

Associated Gene:

Gene:
GNB3
Ensembl Gene ID:
ENSAPLG00000003313
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003388
79584802 - 79589215
4414