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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79587560_79588078_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79587560 - 79588078
Intron Length:
519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTACGTATG
5'SS Class:
major
3'SS Sequence:
GTGCTCTCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTAAAA
U12 Branch Point Sequence:
GAGGGATTAAAA
Flanking Amino Acid:
GHESDINAICFFPNGEAICT
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.4
0.27
1.4
63.8
47.8
Major BPS
64.3
0.36
1
71.3
30.3
Major PPT
72.7
0.51
0.9
69.6
36.7
Minor 5ss
39.2
-1.2
3
46.2
42.4
Minor BPS
42
-0.6
2.1
47.8
41.8

Associated Gene:

Gene:
GNB3
Ensembl Gene ID:
ENSAPLG00000003313
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003388
79584802 - 79589215
4414