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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79596437_79596683_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
79596437 - 79596683
Intron Length:
247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
CTCCATGAGACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TTCTCCATGAGA
Flanking Amino Acid:
YLHLKRTRKPKEEDANSSAG
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
69.6
36.7
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
57.5
0.17
1.1
52.8
40.5
Minor 5ss
29
-2.4
3.5
38
46.9
Minor BPS
55.8
0.17
2
71.36
40.9

Associated Gene:

Gene:
USP5
Ensembl Gene ID:
ENSAPLG00000003443
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018612
79596037 - 79607868
11832