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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79596437_79598273_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79596437 - 79598273
Intron Length:
1837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCCCAT
U12 Branch Point Sequence:
ATTGCCACAATG
Flanking Amino Acid:
LPAPQADAQAGVEGGFDITE
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
69.6
36.7
Major BPS
57.1
0.18
1.4
66.4
42.2
Major PPT
85.6
0.8
0.6
81.9
23
Minor 5ss
29
-2.4
3.5
38
46.9
Minor BPS
48.2
-0.2
2
59.1
42.8

Associated Gene:

Gene:
USP5
Ensembl Gene ID:
ENSAPLG00000003443
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003572
79596037 - 79607618
11582