Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79603418_79604807_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

79603418 - 79604807

Intron Length:

1390

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

TAATCTCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

GTGATGTTAATC

Flanking Amino Acid:

TALQAKSVALKTTRFASFPD

Intron Amino Acid Position:

522

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

0.9

35.2

Major BPS

84.4

0.85

34.5

Major PPT

80.9

0.7

0.9

77.9

35.9

Minor 5ss

32.6

-2

3.3

40.4

Minor BPS

48.5

-0.1

2.1

59.01

40.5

Associated Gene:

Gene:

USP5

Ensembl Gene ID:

ENSAPLG00000003443

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018612

79596037 - 79607868

11832

ENSAPLT00000003572

79596037 - 79607618

11582