Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79606475_79607105_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

79606475 - 79607105

Intron Length:

631

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTGAGTTCC

5'SS Class:

strong_major

3'SS Sequence:

TCTTCCTGTCAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTGAT

U12 Branch Point Sequence:

TCTCTGATAACT

Flanking Amino Acid:

VGPKVRDGPGKYQLFAFISH

Intron Amino Acid Position:

764

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.3

0.74

0.9

74.7

29.4

Major BPS

0.72

38.9

Major PPT

68.7

0.42

1.1

67.6

38.1

Minor 5ss

37.7

-1.4

2.8

45.3

36.6

Minor BPS

48.5

-0

2.3

73.75

Associated Gene:

Gene:

USP5

Ensembl Gene ID:

ENSAPLG00000003443

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018612

79596037 - 79607868

11832

ENSAPLT00000003572

79596037 - 79607618

11582