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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79608261_79609045_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79608261 - 79609045
Intron Length:
785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGGCG
5'SS Class:
major
3'SS Sequence:
CTCTGCCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
TCTTCCTGAAAG
Flanking Amino Acid:
LNGAKLSADTEVVCGAPSIY
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
57.4
41.8
Major BPS
69.6
0.49
1
59.5
39
Major PPT
78.6
0.64
0.8
69
37.1
Minor 5ss
23.7
-3
3.2
21.5
37.3
Minor BPS
65.6
0.35
1.7
69.82
43

Associated Gene:

Gene:
TPI1
Ensembl Gene ID:
ENSAPLG00000004000
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004110
79607911 - 79610490
2580