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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79609614_79609842_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79609614 - 79609842
Intron Length:
229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAC
U12 Branch Point Sequence:
GCTTGCTTACAC
Flanking Amino Acid:
VVFEQTKAIADNVKDWSKVV
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
71
34.4
Major BPS
66.4
0.41
1.1
57.4
41.4
Major PPT
80.4
0.68
0.7
72.7
32.1
Minor 5ss
28.7
-2.4
3.5
34
43.2
Minor BPS
47.8
-0.1
2.1
60
45

Associated Gene:

Gene:
TPI1
Ensembl Gene ID:
ENSAPLG00000004000
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004110
79607911 - 79610490
2580