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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79609929_79610084_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79609929 - 79610084
Intron Length:
156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCGCA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTCCAT
U12 Branch Point Sequence:
TTCTGTTCCATT
Flanking Amino Acid:
GTGKTATPQQAQEVHEKLRG
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
67.7
37.7
Major BPS
59.5
0.24
1.5
72.5
43.5
Major PPT
80.8
0.69
0.9
74.4
35
Minor 5ss
42.7
-0.8
3.1
56.5
47.9
Minor BPS
44.5
-0.3
2.3
67.06
44.8

Associated Gene:

Gene:
TPI1
Ensembl Gene ID:
ENSAPLG00000004000
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004110
79607911 - 79610490
2580