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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79614555_79615329_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79614555 - 79615329
Intron Length:
775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TTTTATTCACAT
Flanking Amino Acid:
HAYVKFEAKYKDLTDISLLE
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
0.9
72.1
31.2
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
73.6
0.53
0.7
68.7
25.2
Minor 5ss
30.2
-2.3
3.1
36.2
34.2
Minor BPS
48
-0
2
74.48
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004212
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030042
79614227 - 79615952
1726
ENSAPLT00000004313
79614227 - 79619273
5047