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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79620197_79620442_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
79620197 - 79620442
Intron Length:
246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
GTTCCTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
AGGCATTTAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
83.8
0.76
0.8
81.1
30.9
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
55.5
0.17
1.5
61.21
38.4

Associated Gene:

Gene:
ENO2
Ensembl Gene ID:
ENSAPLG00000019275
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032753
79619974 - 79632080
12107