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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79624962_79626351_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79624962 - 79626351
Intron Length:
1390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGAGG
5'SS Class:
major
3'SS Sequence:
TTCTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
TTCTCAGGAGCT
Flanking Amino Acid:
TTTSPVSLEKGLSVVDQEKI
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
60.4
45.8
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
92.3
0.95
0.6
88.3
21.5
Minor 5ss
24.8
-2.9
3.1
30.1
43.2
Minor BPS
43.5
-0.4
2.4
70.08
46.3

Associated Gene:

Gene:
ENO2
Ensembl Gene ID:
ENSAPLG00000019275
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032753
79619974 - 79632080
12107