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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79626422_79626574_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79626422 - 79626574
Intron Length:
153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAATTTTT
5'SS Class:
major
3'SS Sequence:
TTTTTGCCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TAACTCCTAATT
Flanking Amino Acid:
MLEMDGTENKSKFGANAILG
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
82.7
30.2
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
82.4
0.73
0.8
76.9
32
Minor 5ss
48.6
-0.1
2.8
71.9
38
Minor BPS
56.1
0.27
1.6
72.29
38.2

Associated Gene:

Gene:
ENO2
Ensembl Gene ID:
ENSAPLG00000019275
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032753
79619974 - 79632080
12107