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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79628418_79628546_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79628418 - 79628546
Intron Length:
129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
GTTGTCCCTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TGAGTTTTGACT
Flanking Amino Acid:
LYQSFVRDYPVVSIEDPFDQ
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.2
38.5
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
78.5
0.64
0.9
74.4
36.5
Minor 5ss
38.8
-1.3
3
50.2
46.4
Minor BPS
59.1
0.37
1.4
71.54
39.8

Associated Gene:

Gene:
ENO2
Ensembl Gene ID:
ENSAPLG00000019275
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032753
79619974 - 79632080
12107