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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79629260_79629602_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79629260 - 79629602
Intron Length:
343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTGAT
U12 Branch Point Sequence:
AGGGCCTGATGT
Flanking Amino Acid:
ERLAKYNQLMRIEEELGDEA
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
73.9
36.8
Major BPS
61
0.27
1.3
53.3
44.2
Major PPT
82.4
0.73
0.7
76.8
25.2
Minor 5ss
29.6
-2.3
3.5
41.1
45.6
Minor BPS
42.9
-0.4
2
55.76
46.1

Associated Gene:

Gene:
ENO2
Ensembl Gene ID:
ENSAPLG00000019275
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032753
79619974 - 79632080
12107