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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79653726_79654086_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79653726 - 79654086
Intron Length:
361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTACAA
5'SS Class:
major
3'SS Sequence:
CTCTCCCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCCCAC
U12 Branch Point Sequence:
TCTCCCTTACAG
Flanking Amino Acid:
KAEKSRQATKKGRVEESCTP
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
60.7
39.9
Major BPS
50
0
1.2
61.8
35.9
Major PPT
82.4
0.73
0.7
75.9
26.3
Minor 5ss
29.9
-2.3
3.3
38.7
46.4
Minor BPS
55.1
0.02
1.9
62.06
45.4

Associated Gene:

Gene:
ATN1
Ensembl Gene ID:
ENSAPLG00000021772
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020777
79653197 - 79660816
7620