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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79657339_79657425_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79657339 - 79657425
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGTGTG
5'SS Class:
major
3'SS Sequence:
TGCTGTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAT
U12 Branch Point Sequence:
GGACCCTGATGT
Flanking Amino Acid:
EKERELERSVKMAQEGRPVE
Intron Amino Acid Position:
855

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
68.8
42.2
Major BPS
66.4
0.41
1.1
56.9
40.5
Major PPT
79.3
0.66
0.9
72.9
37.4
Minor 5ss
35
-1.7
3.5
45
44.5
Minor BPS
43.9
-0.3
1.9
57.39
44.2

Associated Gene:

Gene:
ATN1
Ensembl Gene ID:
ENSAPLG00000021772
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020777
79653197 - 79660816
7620