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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79658797_79659066_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79658797 - 79659066
Intron Length:
270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGGTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
CTGTTATTAACT
Flanking Amino Acid:
ENEVLRHQLFAAPYRDLPGS
Intron Amino Acid Position:
1142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
70.2
40.5
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
79.2
0.66
1
72.9
42.2
Minor 5ss
34.5
-1.8
3.5
48.2
47.3
Minor BPS
67.2
0.62
1.6
80.43
41.6

Associated Gene:

Gene:
ATN1
Ensembl Gene ID:
ENSAPLG00000021772
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020777
79653197 - 79660816
7620