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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79661909_79661987_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79661909 - 79661987
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
GCTACCTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTGCAC
U12 Branch Point Sequence:
CAGCCGCTACCT
Flanking Amino Acid:
KAYGFSSDGEGVLKFARLIK
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
56.7
42.7
Major BPS
44
-0.3
1.5
51
44.3
Major PPT
76.3
0.59
0.9
69
36.9
Minor 5ss
25.7
-2.8
3.1
23.3
37.3
Minor BPS
39.2
-0.7
2.4
54.99
46.4

Associated Gene:

Gene:
C12orf57
Ensembl Gene ID:
ENSAPLG00000017896
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038999
79661595 - 79662345
751