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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79669700_79672134_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79669700 - 79672134
Intron Length:
2435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTGTTTTTATTT
Flanking Amino Acid:
PLNCSDPTTERWYHGHLSGA
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.4
40.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.6
0.84
0.7
81.3
36.3
Minor 5ss
37.7
-1.4
3.1
48.6
47.2
Minor BPS
56.7
0.29
1.6
70.24
42.1

Associated Gene:

Gene:
PTPN6
Ensembl Gene ID:
ENSAPLG00000004866
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005098
79668785 - 79676085
7301