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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79672358_79672484_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79672358 - 79672484
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGGG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCCCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAC
U12 Branch Point Sequence:
TGGGATGTAACA
Flanking Amino Acid:
KVTHVKIMCENGRYTVGGAE
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
63.1
43.4
Major BPS
65.7
0.39
1.2
67.4
36.7
Major PPT
79.7
0.67
0.7
78
24
Minor 5ss
30.3
-2.3
3.3
37.8
47.1
Minor BPS
44.7
-0.4
2.2
56.38
43.1

Associated Gene:

Gene:
PTPN6
Ensembl Gene ID:
ENSAPLG00000004866
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005098
79668785 - 79676085
7301