About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79672602_79672758_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79672602 - 79672758
Intron Length:
157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCCC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTGTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TCTCTCTCATGC
Flanking Amino Acid:
VSGTFVYLKQPYYATRVNAA
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
72.1
37.7
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
76.7
0.6
0.8
68.7
37.2
Minor 5ss
34.8
-1.7
2.9
45.4
42.6
Minor BPS
44.2
-0.4
2
55.25
43.1

Associated Gene:

Gene:
PTPN6
Ensembl Gene ID:
ENSAPLG00000004866
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005098
79668785 - 79676085
7301