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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79672873_79673293_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79672873 - 79673293
Intron Length:
421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTACCAT
U12 Branch Point Sequence:
TTTACCATAACT
Flanking Amino Acid:
SKAGFWEEFDSLQKQEAKQL
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
77.2
31.1
Major BPS
65.6
0.39
1.3
75.1
39.4
Major PPT
85.7
0.8
0.8
83.6
31.5
Minor 5ss
36.2
-1.6
3
48.5
40.6
Minor BPS
76.5
0.91
1.6
94.33
32.4

Associated Gene:

Gene:
PTPN6
Ensembl Gene ID:
ENSAPLG00000004866
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005098
79668785 - 79676085
7301