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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79673391_79673853_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
79673391 - 79673853
Intron Length:
463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTGAGTCCT
5'SS Class:
major
3'SS Sequence:
GCTGCACCCCTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TATCTCATAACT
Flanking Amino Acid:
SKNRYKNILPFDHSRVILQG
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
66.2
39
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
58.3
0.19
0.9
47.8
35.7
Minor 5ss
34
-1.8
3
48.7
41.1
Minor BPS
66.8
0.61
1.6
83.78
36.2

Associated Gene:

Gene:
PTPN6
Ensembl Gene ID:
ENSAPLG00000004866
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005098
79668785 - 79676085
7301