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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79674423_79674639_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79674423 - 79674639
Intron Length:
217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTGTG
5'SS Class:
major
3'SS Sequence:
TTTCTGTTATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAC
U12 Branch Point Sequence:
TTTCTGTTATCA
Flanking Amino Acid:
RHLCVCPKNNSDAVREIWHY
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.3
72.2
39.5
Major BPS
68.8
0.47
1.2
63.4
44
Major PPT
81.9
0.72
0.9
81.6
34.7
Minor 5ss
32.2
-2
3.3
39.4
39.8
Minor BPS
50.5
0.01
2.3
72.17
40

Associated Gene:

Gene:
PTPN6
Ensembl Gene ID:
ENSAPLG00000004866
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005098
79668785 - 79676085
7301