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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79675500_79675787_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79675500 - 79675787
Intron Length:
288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCCTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
CTCTTCTCAGCT
Flanking Amino Acid:
TTKKKLEVIQSQKSKQTESE
Intron Amino Acid Position:
539

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.8
76.8
33.7
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
81.9
0.72
0.7
77.8
24.2
Minor 5ss
27.4
-2.6
2.7
30.4
43
Minor BPS
53
0.17
1.8
71.41
45.7

Associated Gene:

Gene:
PTPN6
Ensembl Gene ID:
ENSAPLG00000004866
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005098
79668785 - 79676085
7301