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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79683732_79683823_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79683732 - 79683823
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAACG
5'SS Class:
strong_major
3'SS Sequence:
GTCTCCTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
ACTTCTTCACCC
Flanking Amino Acid:
RKISSPTGSKDLQMVNISLR
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
74.2
36.1
Major BPS
77.5
0.68
1
79.6
33
Major PPT
76
0.59
0.8
73.2
31.7
Minor 5ss
28.3
-2.5
2.7
32
42.1
Minor BPS
52.6
0.06
1.8
64.51
41.5

Associated Gene:

Gene:
PHB2
Ensembl Gene ID:
ENSAPLG00000005151
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005334
79678711 - 79684273
5563