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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79683904_79683983_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79683904 - 79683983
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCAC
5'SS Class:
major
3'SS Sequence:
CTCGCCCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
TCCGCCTGACGG
Flanking Amino Acid:
DTILAEGLHFRIPWFQYPII
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
63.9
42.4
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
69.5
0.44
0.8
65.5
30.4
Minor 5ss
29.7
-2.3
3.5
40.5
46
Minor BPS
41.5
-0.7
2.1
43.08
48.3

Associated Gene:

Gene:
PHB2
Ensembl Gene ID:
ENSAPLG00000005151
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005334
79678711 - 79684273
5563