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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79684069_79684146_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79684069 - 79684146
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
GCCTCCCTGACC
Flanking Amino Acid:
AYGVRESVFIVEGGQRAIFF
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
68.7
38.1
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
75
0.56
0.7
69
24.7
Minor 5ss
27.1
-2.6
3
31.9
42.5
Minor BPS
56.6
0.19
1.7
63.35
42.4

Associated Gene:

Gene:
PHB2
Ensembl Gene ID:
ENSAPLG00000005151
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005334
79678711 - 79684273
5563