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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79684720_79685049_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79684720 - 79685049
Intron Length:
330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCAGG
5'SS Class:
major
3'SS Sequence:
TATTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATATTTTTAAAA
Flanking Amino Acid:
AGVRPDITHQSLLMLMDSPL
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.8
0.35
1.3
54.7
49.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
93.6
0.98
0.6
92.5
25.6
Minor 5ss
43.3
-0.7
3
58
46.3
Minor BPS
66.6
0.52
1.3
71.49
33.9

Associated Gene:

Gene:
EMG1
Ensembl Gene ID:
ENSAPLG00000005308
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005478
79684412 - 79686404
1993