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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79685192_79685558_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79685192 - 79685558
Intron Length:
367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTCGTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
GGTTGCTTAACT
Flanking Amino Acid:
RTFDRFCGLMVQLLHKLSVR
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.4
32.7
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
77.1
0.61
0.9
77.1
31.6
Minor 5ss
33.9
-1.8
3.3
40.8
45.4
Minor BPS
72.4
0.78
1.8
85.81
40

Associated Gene:

Gene:
EMG1
Ensembl Gene ID:
ENSAPLG00000005308
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005478
79684412 - 79686404
1993