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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79685618_79685770_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
79685618 - 79685770
Intron Length:
153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACACT
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTTCTCGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACTTAC
U12 Branch Point Sequence:
TTACCCTGCACT
Flanking Amino Acid:
AADGPQKLLKVIKNPINDHL
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
77.8
36.9
Major BPS
64.9
0.37
0.9
55.4
32.3
Major PPT
59.1
0.21
1.7
65.5
41.1
Minor 5ss
41.4
-1
3
58.6
45.7
Minor BPS
57.8
0.33
2
79.76
41.5

Associated Gene:

Gene:
EMG1
Ensembl Gene ID:
ENSAPLG00000005308
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005478
79684412 - 79686404
1993