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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79687403_79687512_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79687403 - 79687512
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTACT
5'SS Class:
major
3'SS Sequence:
TCTCTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TGATTCTCAACC
Flanking Amino Acid:
CLFTWDKWMKVYRSIYFLGH
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
79
34.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
88.7
0.87
0.7
83.3
25.1
Minor 5ss
44.5
-0.6
2.5
61.4
42.8
Minor BPS
65.9
0.48
1.5
72.34
38.2

Associated Gene:

Gene:
LPCAT3
Ensembl Gene ID:
ENSAPLG00000005313
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033780
79687286 - 79699963
12678
ENSAPLT00000005500
79687286 - 79700074
12789