Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79692385_79692537_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

79692385 - 79692537

Intron Length:

153

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAAATTC

5'SS Class:

major

3'SS Sequence:

TGGTTTCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGTTGAA

U12 Branch Point Sequence:

ATTAGTTGAAGT

Flanking Amino Acid:

AVFTTFLFQMTYLMAGYYFT

Intron Amino Acid Position:

105

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.5

0.6

33.5

Major BPS

63.2

0.33

1.1

55.1

42.1

Major PPT

83.7

0.76

0.9

81.2

36.5

Minor 5ss

-0.9

3.2

42.9

Minor BPS

46.1

-0.2

2.1

67.71

43.1

Associated Gene:

Gene:

LPCAT3

Ensembl Gene ID:

ENSAPLG00000005313

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005500

79687286 - 79700074

12789

ENSAPLT00000033780

79687286 - 79699963

12678