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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79692645_79692766_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79692645 - 79692766
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TCTCTCTCCACA
Flanking Amino Acid:
TGLSIAYFNFGMQFFHSLLC
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
70.5
36.3
Major BPS
72.7
0.56
1
75
30.1
Major PPT
81.2
0.7
0.7
75.9
26.2
Minor 5ss
37.4
-1.4
3
44.6
45.1
Minor BPS
48.9
-0
2
64.43
42.1

Associated Gene:

Gene:
LPCAT3
Ensembl Gene ID:
ENSAPLG00000005313
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033780
79687286 - 79699963
12678
ENSAPLT00000005500
79687286 - 79700074
12789