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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79692875_79699762_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79692875 - 79699762
Intron Length:
6888

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGGGCG
5'SS Class:
major
3'SS Sequence:
CCCTTCTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TAACTTATAACT
Flanking Amino Acid:
ALRLILSILMGYPFALFQRY
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
57.4
41.8
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
78.1
0.63
0.7
76.1
26
Minor 5ss
23.7
-3
3.2
21.5
37.3
Minor BPS
55.7
0.26
1.6
72.36
37.9

Associated Gene:

Gene:
LPCAT3
Ensembl Gene ID:
ENSAPLG00000005313
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005500
79687286 - 79700074
12789