Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79694912_79699762_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

79694912 - 79699762

Intron Length:

4851

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGGGCG

5'SS Class:

major

3'SS Sequence:

CTGTCCTCCTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTGAT

U12 Branch Point Sequence:

AACTCTTTGATG

Flanking Amino Acid:

RCASSSPSSWLAFRDRGGAC

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.8

0.56

57.4

41.8

Major BPS

0.85

0.9

39.9

Major PPT

75.8

0.58

0.8

73.3

31.6

Minor 5ss

23.7

-3

3.2

21.5

37.3

Minor BPS

59.6

0.16

1.3

56.86

39.3

Associated Gene:

Gene:

LPCAT3

Ensembl Gene ID:

ENSAPLG00000005313

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033780

79687286 - 79699963

12678