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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_79706018_79706445_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79706018 - 79706445
Intron Length:
428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
ACTTCTGCAATA
Flanking Amino Acid:
MWYLIFFCLPV
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.2
28.3
Major BPS
79.4
0.73
1
80.1
32
Major PPT
88
0.85
0.6
87.3
23.2
Minor 5ss
35.2
-1.7
2.8
40.3
40.2
Minor BPS
47.5
-0.1
2.1
61.26
39.8

Associated Gene:

Gene:
C1S
Ensembl Gene ID:
ENSAPLG00000005501
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005757
79705151 - 79715100
9950